BCE-package {BCE} | R Documentation |
The Bayesian Compositional Estimator Package
Description
Functions that estimate sample (taxonomic) composition from biomarker data
bce1
estimates probability distributions of a sample composition
based on an input ratio matrix, A
, containing
biomarker ratios in (field) samples, and an input data matrix,
B
, containing the biomarker ratios for several taxonomic groups
tlsce
estimates the total least squares solution
This version differs from the previous version <2 in that a different MCMC method is used that shows better convergence properties and has a more sound underlying statistical model.
Details
Package: | BCE |
Type: | Package |
License: | GNU Public License 2 or above |
Author(s)
Karel Van den Meersche (Maintainer)
Karline Soetaert
References
Van den Meersche, K., K. Soetaert and J.J. Middelburg (2008) A Bayesian compositional estimator for microbial taxonomy based on biomarkers, Limnology and Oceanography Methods 6, 190-199
See Also
bce
the new function, with better convergence properties
BCE
the original function (versions < 2)
tlsce
total least squares compositional estimator
Examples
## Not run:
## show examples (see respective help pages for details)
example(bce)
example(tlsce)
## show package vignette
browseURL(paste(system.file(package = "BCE"), "/doc", sep = ""))
## End(Not run)