subsetEventData {BAMMtools} | R Documentation |
Subset a bammdata
object
Description
Subsets a bammdata
object. Returns a bammdata
object after extracting a specified set of samples from the posterior.
Usage
subsetEventData(ephy, index)
Arguments
ephy |
An object of class |
index |
A vector of integers corresponding to samples to be extracted
from the posterior distribution of shift configurations included in
the |
Details
This will result in an error if you attempt to access samples
that do not exist in the ephy
data object. For example, if your
bammdata
object includes 100 samples from a posterior
distribution sampled with BAMM
, you can only attempt to subset
with index values 1:100.
Author(s)
Dan Rabosky
See Also
plot.bammdata
, getCohortMatrix
,
image
Examples
data(whales, events.whales)
ed <- getEventData(whales, events.whales, nsamples=500)
ed2 <- subsetEventData(ed, index=1)
plot(ed2)
addBAMMshifts(ed2, cex=2)
[Package BAMMtools version 2.1.11 Index]