plot.density.and.or.trace {BALD} | R Documentation |
A rather generic function to plot diagnostics for a single node (a one-dimensional node or a single slot from a multi-dimensional node). Intended for internal use only.
plot.density.and.or.trace( coda, plotDensity, plotTrace, d.prior, nice.parameter.name, zero.line=FALSE, lower.bound=NA, upper.bound=NA, draw.prior=TRUE)
coda |
The code for the node. Rows are iterations. Columns are chains. |
plotDensity |
A logical value. If |
plotTrace |
A logical value. If |
d.prior |
A function that takes an array of values and returns the prior density evaluated at those values. |
nice.parameter.name |
A character value to use as labels in plots. |
zero.line |
A logical value. Should a verical zero line be drawn on the density plot? |
lower.bound |
Can be missing, used by |
upper.bound |
Can be missing, used by |
draw.prior |
Should the prior be drawn? |
Mainly called for the side effect of plotting. Also returns a vector of quantiles.