small_alignment {BALCONY}R Documentation

Sample small alignment of soluable epoxide hydrolase family

Description

This alignment consists of 10 proteins which belong to the soluable epoxide hydrolase family. The amino acid sequences were aligned using MUSCLE algorithm with default settings.

Format

An alignment object read with read.alignment function from seqinr package.

alignment$nb

A numeric: number of sequences

alignment$nam

A vector of characters: names of the sequences

alignment$seq

A vector of characters: amino acid sequences

Details

This is a smaller version of sample alignment which facilitates faster presentation of the functions capabilities.

Examples

data("small_alignment")
small_alignment

[Package BALCONY version 0.2.10 Index]