pairwise_alignment_MSA {BALCONY}R Documentation

Calculate pairwise alignment for whole MSA

Description

For given alignment calculate pariwise alignments and returns alignment score.

Usage

pairwise_alignment_MSA(alignment)

Arguments

alignment

An alignment object read with read.alignment function

Value

score_mtx

Matrix of alignment scores

Author(s)

Michal Stolarczyk & Alicja Pluciennik

Examples

data("small_alignment")
pairwiseAlignemnt_scores=pairwise_alignment_MSA(small_alignment)

[Package BALCONY version 0.2.10 Index]