get_remarks465_pdb {BALCONY}R Documentation

Get "REMARK 465" data from PDB file

Description

This function extracts the data concerning missing amino acids in PDB protein structure from the PDB file

Usage

get_remarks465_pdb(pdb_path, chain_identifier)

Arguments

pdb_path

A string specifying the path tp the PDB file

chain_identifier

A character specifying the chain to be considered

Value

aa_numbers

A numeric vector of indices of missing amino acids

chain

A character specifying the chain which was considered in remark 465 data extraction

Author(s)

Michal Stolarczyk & Alicja Pluciennik

See Also

read.pdb

Examples

require(Rpdb)
chain_identifier = "A"
pdb_path = system.file("extdata", "4jnc.pdb", package = "BALCONY")
print(pdb_path)
#pdb_file_path = "path_to_file"
remark465_data = get_remarks465_pdb(pdb_path,chain_identifier)

[Package BALCONY version 0.2.10 Index]