barplotshow {BALCONY}R Documentation

Shows barplot with amino acid variation on the specified position

Description

This function facilitates a visual inspection of multiple sequence alignment (MSA) position variablity.

Usage

barplotshow(position, AA_variation)

Arguments

position

A number of column of alignment to be visualized

AA_variation

A percentage frequency of amino acids in the alignment, calculated with calculate_AA_variation function

Value

This function produces a barchart

Author(s)

Alicja Pluciennik & Michal Stolarczyk

See Also

calculate_AA_variation

Examples

data("small_alignment")
position = 100
threshold = 0.01
var_aa = calculate_AA_variation(small_alignment,threshold)
barplotshow(position, var_aa)

[Package BALCONY version 0.2.10 Index]