alignment {BALCONY}R Documentation

Sample alignment of soluable epoxide hydrolase family

Description

was performed on a dataset comprising 311 soluble epoxide hydrolase peptide orthologous sequences acquired from UniProtKB. The alignment was performed and edited with MUSCLE algorithm in JALVIEW, respectively.

Format

An alignment object read with read.alignment function from seqinr package.

alignment$nb

A numeric: number of sequences

alignment$nam

A vector of characters: names of the sequences

alignment$seq

A vector of characters: amino acid sequences

References

MUSCLE: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-113
JALVIEW: https://academic.oup.com/bioinformatics/article/25/9/1189/203460/Jalview-Version-2-a-multiple-sequence-alignment

Examples

data("alignment")
alignment

[Package BALCONY version 0.2.10 Index]