RealValET_conservativity {BALCONY}R Documentation

Calculate real-value Evolutionary Trace (ET)

Description

This function allows to calculate real-valued ET for MSA.

Usage

RealValET_conservativity(alignment)

Arguments

alignment

Alignment data read with read.alignment() function

Details

Here, the real-valued ET is calculated using an evolutionary tree calculated for given alignment. The tree is calculated using UPGMA method. Real-valued ET score can be used as complimentary analysis of evolutionary entropy measures.

Value

\ itemxA vector of real valued ET score corresponding to each MSA column

Author(s)

Alicja Plucennik & Michal Stolarczyk

References

Mihalek, Res, Lichtarge, 2004

Examples

data("small_alignment")
alignment = small_alignment
weights = get_seq_weights(alignment)

[Package BALCONY version 0.2.10 Index]