AncestryMapper {AncestryMapper}

Ancestry Mapper 2.0

Description

Package computes the genetic distance, defined as the euclidean distance amongst a sample set of individuals and any number of human population references. The package allows for the visualisation of the relationship of sample individuals to the reference populations, thus permitting the user to assess the relationship of individuals to different geographic groupings.

Package comes with pre-loaded with toy data and toy references from various sources comprising 158 global populations.

Additional and full Population References can be downloaded from:

http://bit.ly/1OUstDP

Details

Package:	AncestryMapper
Type:	Package
Version:	2.0
Date:	2016-08-??
License:	None
LazyLoad:	yes

Author(s)

Eoghan T. O'Halloran ,Tiago R. Magalh\~aes, Darren J. Fitzpatrick

Maintainer: Eoghan T. O'Halloran <[e-mail]>

References

Magalh\~aes et al, 2012 PLOS One accepted.

See Also

image dist

Examples

## Not run: 
library(AncestryMapper)
Refs <- system.file ("data", package = "AncestryMapper")

tpeds <- system.file ("extdata", package = "AncestryMapper")

Corpheno <- system.file ("extdata", "CorPheno", package =
"AncestryMapper")

All00Frq <- system.file ("data", "MinMaxFreq.rda", package = "AncestryMapper")

genetic.distance <- calculateAMidsArith(pathTotpeds = tpeds,
                                         NameOut = "Example",
                                         pathToAriMedoids = Refs,
                                         pathAll00 = All00Frq)

plotAMids(AMids = genetic.distance, phenoFile = Corpheno, columnPlot = "I")
## End(Not run)