import_seurat_scANANSE {AnanseSeurat}

import_seurat_scANANSE

Description

import the influences from a anansnake directory into a seurat object

Usage

import_seurat_scANANSE(
  seurat_object,
  cluster_id = "seurat_clusters",
  anansnake_inf_dir = "None",
  return_df = FALSE
)

Arguments

seurat_object

seurat object

cluster_id

ID used for finding clusters of cells

anansnake_inf_dir

influence directory generated by anansnake

return_df

return both the seurat object and a dataframe with influence scores as a list

Value

seurat object with the influence scores addes as an assay

Examples

sce_small <- readRDS(system.file("extdata","sce_small.Rds",package = 'AnanseSeurat'))
infdir <- system.file("extdata","influence",package = 'AnanseSeurat')
sce_small <- import_seurat_scANANSE(sce_small, anansnake_inf_dir = infdir)