export_ATAC_scANANSE {AnanseSeurat} | R Documentation |
export_ATAC_scANANSE
Description
This functions exports ATAC values from a seurat object
Usage
export_ATAC_scANANSE(
seurat_object,
output_dir,
min_cells = 50,
ATAC_peak_assay = "peaks",
cluster_id = "seurat_clusters"
)
Arguments
seurat_object |
object |
output_dir |
directory where the files are outputted |
min_cells |
minimum of cells a cluster needs to be exported |
ATAC_peak_assay |
assay of the seurat object containing the peaks and peakcounts |
cluster_id |
ID used for finding clusters of cells |
Value
None, outputs ATAC peak count file in the output directory
Examples
sce_small <- readRDS(system.file("extdata","sce_small.Rds",package = 'AnanseSeurat'))
export_ATAC_scANANSE(sce_small, min_cells = 2, output_dir = tempdir())
[Package AnanseSeurat version 1.2.0 Index]