taxon_mwu_list {Anaconda}

taxon_mwu_list

Description

taxon Mann-Whitney U list for taxonomic analysis

Usage

taxon_mwu_list(
  inFile,
  goAnnotations,
  goDivision,
  level1 = 0.1,
  level2 = 0.05,
  level3 = 0.01,
  absValue = -log(0.05, 10),
  adjusted = TRUE,
  txtsize = 1,
  font.family = "sans",
  treeHeight = 0.5,
  colors = NULL
)

Arguments

inFile

inFile - results object from the DASVA analysis

goAnnotations

parallel to goAnnotations from gomwuStats from RBGOA. Here, "database_bacteria_package_all.tab" if Bacteria, "database_fungi_package_all.tab" if Fungi

goDivision

parallel to goAnnotations from gomwuStats from RBGOA. Here, "TR" = taxonomic Rank, don't change this

level1

level1

level2

level2

level3

level3

absValue

absValue

adjusted

adjusted

txtsize

txtsize

font.family

font.family

treeHeight

treeHeight

colors

colors

Value

List for the statistical analysis for taxonomic rank

Examples

## Not run: taxon_list <- taxon_mwu_list(input, ...)