plotCodonSpecificParameters {AnaCoDa}

Plot Codon Specific Parameter

Description

Plots a codon-specific set of traces, specified with the type parameter.

Usage

plotCodonSpecificParameters(
  trace,
  mixture,
  type = "Mutation",
  main = "Mutation Parameter Traces",
  ROC.or.FONSE = TRUE,
  log.10.scale = F
)

Arguments

trace

An Rcpp trace object initialized with initializeTraceObject.

mixture

The mixture for which to plot values.

type

A string containing one of the following to graph: Mutation, Selection, Alpha, LambdaPrime, MeanWaitingTime, VarWaitingTime.

main

The title of the plot.

ROC.or.FONSE

A logical value determining if the Parameter was ROC/FONSE or not.

log.10.scale

A logical value determining if figures should be plotted on the log.10.scale (default=F). Should not be applied to mutation and selection parameters estimated by ROC/FONSE.

Value

This function has no return value.