plot.Rcpp_MCMCAlgorithm {AnaCoDa}

Plot MCMC algorithm

Description

This function will plot the logLikelihood trace, and if the Hmisc package is installed, it will plot a subplot of the logLikelihood trace with the first few samples removed.

Usage

## S3 method for class 'Rcpp_MCMCAlgorithm'
plot(x, what = "LogPosterior", zoom.window = NULL, ...)

Arguments

x

An Rcpp_MCMC object initialized with initializeMCMCObject.

what

character defining if log(Posterior) (Default) or log(Likelihood) options are: LogPosterior or logLikelihood

zoom.window

A vector describing the start and end of the zoom window.

...

Arguments to be passed to methods, such as graphical parameters.

Value

This function has no return value.