initSelectionCategories {AnaCoDa}

initSelectionCategories

Description

Method of Parameter class (access via parameter$<function name>, where parameter is an object initialized by initializeParameterObject). Initialize values for selection CSP. File should be of comma-separated with header. Three columns should be of order Amino_acid,Codon,Value

Arguments

files

list of files containing starting values. Number of files should equal the number of categories.

numCategories

number of mutation categories (should be less than or equal to number of mixtures)

fix

Can use this parameter to fix selection at current values (won't change over course of MCMC run)