initMutationCategories {AnaCoDa}

initMutationCategories

Description

Initialize values for mutation CSP. File should be of comma-separated with header. Three columns should be of order Amino_acid,Codon,Value

Arguments

files

list of files containing starting values. Number of files should equal the number of categories.

numCategories

number of mutation categories (should be less than or equal to number of mixtures)

fix

Can use this parameter to fix mutation at current values (won't change over course of MCMC run)