acfMCMC {AnaCoDa}

Autocorrelation function for the likelihood or posterior trace

Description

The function calculates and by defaults plots the acf and estimates the autocorrelation in the trace.

Usage

acfMCMC(mcmc, type = "LogPosterior", samples = NULL, lag.max = 40, plot = TRUE)

Arguments

mcmc

object of class MCMC

type

"LogPosterior" or "LogLikelihood", defaults to "LogPosterior"

samples

number of samples at the end of the trace used to calculate the acf

lag.max

Maximum amount of lag to calculate acf. Default is 10*log10(N), where N i the number of observations.

plot

logical. If TRUE (default) a plot of the acf is created

See Also

acfCSP