get_AMPs {AmpGram}

R Documentation

Get putative antimicrobial peptides

Description

Function gets sequences recognized as antimicrobial peptides and returns as data.frame.

Usage

get_AMPs(x)

Arguments

x	AmpGram predictions for a single protein

Value

a data.frame with sequences recognized as antimicrobial peptides (AMPs). It consists of two columns:

putative_AMP

amino acid sequence of a 10-mer (subsequence of an analyzed peptide) predicted as AMP.

prob

Probability with which a 10-mer is recognized as AMP.

Examples

data(AmpGram_predictions)
get_AMPs(AmpGram_predictions[[2]])

---