quickHaplo {AlphaSimR}

R Documentation

Quick founder haplotype simulation

Description

Rapidly simulates founder haplotypes by randomly sampling 0s and 1s. This is equivalent to having all loci with allele frequency 0.5 and being in linkage equilibrium.

Usage

quickHaplo(nInd, nChr, segSites, genLen = 1, ploidy = 2L, inbred = FALSE)

Arguments

nInd	number of individuals to simulate
nChr	number of chromosomes to simulate
segSites	number of segregating sites per chromosome
genLen	genetic length of chromosomes
ploidy	ploidy level of organism
inbred	should founder individuals be inbred

Value

an object of MapPop-class

Examples

# Creates a populations of 10 outbred individuals
# Their genome consists of 1 chromosome and 100 segregating sites
founderPop = quickHaplo(nInd=10,nChr=1,segSites=100)

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