pullSegSiteHaplo {AlphaSimR} | R Documentation |
Pull seg site haplotypes
Description
Retrieves haplotype data for all segregating sites
Usage
pullSegSiteHaplo(
pop,
haplo = "all",
chr = NULL,
asRaw = FALSE,
simParam = NULL
)
Arguments
pop |
an object of |
haplo |
either "all" for all haplotypes or an integer for a single set of haplotypes. Use a value of 1 for female haplotypes and a value of 2 for male haplotypes in diploids. |
chr |
a vector of chromosomes to retrieve. If NULL, all chromosome are retrieved. |
asRaw |
return in raw (byte) format |
simParam |
an object of |
Value
Returns a matrix of haplotypes
Examples
#Create founder haplotypes
founderPop = quickHaplo(nInd=10, nChr=1, segSites=15)
#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(10)
SP$addSnpChip(5)
#Create population
pop = newPop(founderPop, simParam=SP)
pullSegSiteHaplo(pop, simParam=SP)
[Package AlphaSimR version 1.5.3 Index]