genParam {AlphaSimR} | R Documentation |

Calculates genetic and genic additive and dominance variances
for an object of `Pop-class`

```
genParam(pop, simParam = NULL)
```

`pop` |
an object of |

`simParam` |
an object of |

- varA
an nTrait by nTrait matrix of additive genetic variances

- varD
an nTrait by nTrait matrix of dominance genetic variances

- varAA
an nTrait by nTrait matrix of additive-by-additive genetic variances

- varG
an nTrait by nTrait matrix of total genetic variances

- genicVarA
an nTrait vector of additive genic variances

- genicVarD
an nTrait vector of dominance genic variances

- genicVarAA
an nTrait vector of additive-by-additive genic variances

- genicVarG
an nTrait vector of total genic variances

- covA_HW
an nTrait vector of additive covariances due to non-random mating

- covD_HW
an nTrait vector of dominance covariances due to non-random mating

- covAA_HW
an nTrait vector of additive-by-additive covariances due to non-random mating

- covG_HW
an nTrait vector of total genic covariances due to non-random mating

- covA_L
an nTrait vector of additive covariances due to linkage disequilibrium

- covD_L
an nTrait vector of dominance covariances due to linkage disequilibrium

- covAA_L
an nTrait vector of additive-by-additive covariances due to linkage disequilibrium

- covAD_L
an nTrait vector of additive by dominance covariances due to linkage disequilibrium

- covAAA_L
an nTrait vector of additive by additive-by-additive covariances due to linkage disequilibrium

- covDAA_L
an nTrait vector of dominance by additive-by-additive covariances due to linkage disequilibrium

- covG_L
an nTrait vector of total genic covariances due to linkage disequilibrium

- mu
an nTrait vector of trait means

- mu_HW
an nTrait vector of expected trait means under random mating

- gv
a matrix of genetic values with dimensions nInd by nTraits

- bv
a matrix of breeding values with dimensions nInd by nTraits

- dd
a matrix of dominance deviations with dimensions nInd by nTraits

- aa
a matrix of additive-by-additive epistatic deviations with dimensions nInd by nTraits

- gv_mu
an nTrait vector of intercepts with dimensions nInd by nTraits

- gv_a
a matrix of additive genetic values with dimensions nInd by nTraits

- gv_d
a matrix of dominance genetic values with dimensions nInd by nTraits

- gv_aa
a matrix of additive-by-additive genetic values with dimensions nInd by nTraits

```
#Create founder haplotypes
founderPop = quickHaplo(nInd=10, nChr=1, segSites=10)
#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitAD(10, meanDD=0.5)
SP$setVarE(h2=0.5)
#Create population
pop = newPop(founderPop, simParam=SP)
ans = genParam(pop, simParam=SP)
```

[Package *AlphaSimR* version 1.3.2 Index]