editGenome {AlphaSimR}R Documentation

Edit genome

Description

Edits selected loci of selected individuals to a homozygous state for either the 1 or 0 allele. The gv slot is recalculated to reflect the any changes due to editing, but other slots remain the same.

Usage

editGenome(pop, ind, chr, segSites, allele, simParam = NULL)

Arguments

pop

an object of Pop-class

ind

a vector of individuals to edit

chr

a vector of chromosomes to edit. Length must match length of segSites.

segSites

a vector of segregating sites to edit. Length must match length of chr.

allele

either 0 or 1 for desired allele

simParam

an object of SimParam

Value

Returns an object of Pop-class

Examples

#Create founder haplotypes
founderPop = quickHaplo(nInd=2, nChr=1, segSites=10)

#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(10)

#Create population
pop = newPop(founderPop, simParam=SP)

#Change individual 1 to homozygous for the 1 allele 
#at locus 1, chromosome 1
pop2 = editGenome(pop, ind=1, chr=1, segSites=1, 
                  allele=1, simParam=SP)


[Package AlphaSimR version 1.3.2 Index]