pedigree.summary {AlleleRetain}

Pedigree Simulation and Summary

Description

Summarizes inbreeding accumulation in the population simulated by aRetain. Must be run after aRetain is run with trackall = TRUE. Requires package pedigree.

Usage

pedigree.summary(adata)

Arguments

adata

list of output from aRetain

Value

A matrix in which the rows correspond to simulation years (0,...,nyears) and the columns are summary variables:

year

year of simulation

meanF

mean F, averaged across individuals and then across replicates

varF

inter-replicate variance in F

indivVarF

inter-individual variance of F, averaged across replicates

Author(s)

Emily L. Weiser [e-mail]

References

Weiser, E.L., Grueber, C. E., and I. G. Jamieson. 2012. AlleleRetain: A program to assess management options for conserving allelic diversity in small, isolated populations. Molecular Ecology Resources 12:1161-1167.