| indiv.summary {AlleleRetain} | R Documentation |
Summary of Individual Information
Description
Summarize information for individuals of each origin (starters, supplementals,
locals, immigrants) simulated by aRetain. Must be run after
aRetain is run with trackall = TRUE.
Usage
indiv.summary(adata, genlength, alpha=0.05)
Arguments
adata |
list of output from |
genlength |
mean age of simulated individuals (breeding pairs only), as
returned by |
alpha |
confidence level e.g. 0.05 for 95% intervals |
Value
A matrix with 4 rows, one for each origin (starter, supplemental, local, immigrant) and the columns are summary variables:
n |
total number of individuals from each origin, summed within each replicate and then averaged across replicates |
pbreed |
probability of each individual breeding (proportion that bred) |
pbreed.LCL |
lower confidence limit for pbreed |
pbreed.UCL |
upper confidence limit for pbreed |
YrsBred |
mean # years bred per individual (including those that never bred) |
YrsBredBr |
mean # of years bred per individual (that bred at least once) |
lifespan |
mean lifespan in the population |
effectivegen |
mean # of individuals that bred each generation |
NMatings |
mean # of total lifetime matings, across individuals |
Author(s)
Emily L. Weiser emily.l.weiser@gmail.com
References
Weiser, E.L., Grueber, C. E., and I. G. Jamieson. 2012. AlleleRetain: A program to assess management options for conserving allelic diversity in small, isolated populations. Molecular Ecology Resources 12:1161-1167.