AlleleRetain {AlleleRetain}

Allele Retention, Inbreeding, and Demography

Description

Simulates the effect of management or demography on allele retention and inbreeding accumulation in bottlenecked populations of animals with overlapping generations.

Details

Typically, the user will run aRetain, then aRetain.summary to assess characteristics of the simulated population. indiv.summary, pedigree.summary (requires package pedigree), LRS.summary, and agerepro.summary will provide further output.