lorentz {AgroReg}

Analysis: Lorentz

Description

Analysis: Lorentz

Usage

lorentz(
  trat,
  resp,
  npar = "lo3",
  sample.curve = 1000,
  ylab = "Dependent",
  xlab = "Independent",
  theme = theme_classic(),
  error = "SE",
  legend.position = "top",
  r2 = "all",
  point = "all",
  width.bar = NA,
  scale = "none",
  textsize = 12,
  pointsize = 4.5,
  linesize = 0.8,
  linetype = 1,
  pointshape = 21,
  fillshape = "gray",
  colorline = "black",
  round = NA,
  xname.formula = "x",
  yname.formula = "y",
  comment = NA,
  fontfamily = "sans"
)

Arguments

trat

Numeric vector with dependent variable.

resp

Numeric vector with independent variable.

npar

number of parameters (lo3 or lo4)

sample.curve

Provide the number of observations to simulate curvature (default is 1000)

ylab

Variable response name (Accepts the expression() function)

xlab

treatments name (Accepts the expression() function)

theme

ggplot2 theme (default is theme_classic())

error

Error bar (It can be SE - default, SD or FALSE)

legend.position

legend position (default is "top")

r2

coefficient of determination of the mean or all values (default is all)

point

defines whether you want to plot all points ("all") or only the mean ("mean")

width.bar

Bar width

scale

Sets x scale (default is none, can be "log")

textsize

Font size

pointsize

shape size

linesize

line size

linetype

line type

pointshape

format point (default is 21)

fillshape

Fill shape

colorline

Color lines

round

round equation

xname.formula

Name of x in the equation

yname.formula

Name of y in the equation

comment

Add text after equation

fontfamily

Font family

Details

The model to the three-parameter Lorentz is:

y = frac{d}{1+b(x-e)^2}

The model to the three-parameter Lorentz is:

y = c+frac{d-c}{1+b(x-e)^2}

Value

The function returns a list containing the coefficients and their respective values of p; statistical parameters such as AIC, BIC, pseudo-R2, RMSE (root mean square error); largest and smallest estimated value and the graph using ggplot2 with the equation automatically.

Author(s)

Model imported from the aomisc package (Onofri, 2020)

Gabriel Danilo Shimizu

References

Seber, G. A. F. and Wild, C. J (1989) Nonlinear Regression, New York: Wiley & Sons (p. 330).

Onofri A. (2020) The broken bridge between biologists and statisticians: a blog and R package, Statforbiology, IT, web: https://www.statforbiology.com

Examples

library(AgroReg)
data("granada")
attach(granada)
x=time[length(time):1]
lorentz(x,WL)