.get_signf_results {ActiveDriverWGS}R Documentation

Returns significant results

Description

Returns significant results

Usage

.get_signf_results(all_res)

Arguments

all_res

a data frame containing the following columns

id

A string identifying the element of interest

pp_element

The p-value of the element

element_muts_obs

The number of patients with a mutation in the element

element_muts_exp

The expected number of patients with a mutation in the element with respect to background

element_enriched

A boolean indicating whether the element is enriched in mutations

pp_site

The p-value of the element

site_muts_obs

The number of patients with a mutation in the site

site_muts_exp

The expected number of patients with a mutation in the site with respect to element

site_enriched

A boolean indicating whether the site is enriched in mutations

result_number

A numeric indicator denoting the order in which the results were calculated

Value

the same data frame with three addition columns

fdr_element

The FDR corrected p-value of the element

fdr_site

The FDR corrected p-value of the site

has_site_mutations

A V indicates the presence of site mutations


[Package ActiveDriverWGS version 1.1.2 Index]