statGen {ASMap} | R Documentation |

## Individual genotype statistics for an R/qtl cross object

### Description

Individual genotype statistics for the current linkage map order of and R/qtl cross object

### Usage

```
statGen(cross, chr, bychr = TRUE, stat.type = c("xo","dxo",
"miss"), id = "Genotype")
```

### Arguments

`cross` |
An R/qtl |

`chr` |
Character vector of linkage group names used for subsetting the linkage map. |

`bychr` |
Logical vector determining whether statistics should be plotted by chromosome (see Details). |

`stat.type` |
Character string of any combination of |

`id` |
Character string determining the column of |

### Details

This function is used in `profileGen`

to plot any combination of
returned linkage map statistics on a single graphical display.

### Value

A list with elements named by the `stat.type`

used in the call. If
`bychr = TRUE`

then each element is a data frame of statistics with
columns named by the linkage groups. If `bychr = FALSE`

then each
element is a vector of statistics named by the `stat.type`

.

### Author(s)

Julian Taylor

### References

Taylor, J., Butler, D. (2017) R Package ASMap: Efficient Genetic
Linkage Map Construction and Diagnosis. Journal of Statistical Software,
**79**(6), 1–29.

### See Also

### Examples

```
data(mapDH, package = "ASMap")
## produce all genotype crossover and double crossover statistics
sg <- statGen(mapDH, stat.type = c("xo","dxo"))
```

*ASMap*version 1.0-7 Index]