Pathway and Gene-Level Association Test


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Documentation for package ‘ARTP2’ version 0.9.45

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ARTP2-package Pathway and Gene-Level Association Test
ARTP2 Pathway and Gene-Level Association Test
data A dataset used in example of 'rARTP'.
exclude.snps Excluding SNPs from specified regions
geno A vector of file names used in example of 'rARTP'.
inflation Computing the genomic control inflation factor from a given numeric vector
meta Single-marker meta-analysis
options options
options.default options.default
pathway A data frame used in example of 'rARTP'.
rARTP ARTP test for raw data
read.bed Reading data from binary PLINK files
ref.does Example reference genotype data coded as expected dosages.
ref.geno A dataset used in example of 'sARTP'.
sARTP ARTP test for summary data
subj.id A vector of subject IDs used in example of 'sARTP'.
warm.start Performing ARTP2 test with warm start