perm.double.grp.single {ANTs} R Documentation

## Double permutation approach for gambit of the group

### Description

Double permutation approach for gambit of the group

### Usage

perm.double.grp.single(
obs,
scan,
ctrlf,
nperm,
progress = TRUE,
index = "sri",
measure,
test = "median",
df = NULL,
dfid = NULL,
...
)


### Arguments

 obs a data frame of gambit of the group observations. The data frame must have a column named 'ID'. scan an integer indicating the column of scans of individual associations in obs. ctrlf A confounding factor by which to control group associationsin obs. nperm number of permutations to perform. progress a boolean indicating if the permutation process must be visible. index Which type of index of associations to calculate: 'sri' for Simple ratio index: x \div x+yAB+yA+yB 'hw' for Half-weight index: x/x+yAB+1/2(yA+yB) 'sr' for Square root index:x/sqr((x+yAB+yA)(x+yAB+yB)) measure a character indicating the social network measure to compute (Only those available in ANTs) test a character indicating the test to realize to account for the social network measure df a data frame of individual characteristics in which store permutations. dfid an integer or a string indicating the column with individual ids in argument df. ... Additional arguments related to the social network measure to compute (argument measure).

### Details

Output need to be incorporated in a data frame and node label permutations with ANTs function perm.net.nl need to be performed before using any ANTs functions "stat.".

### Value

A numeric vector of individuals social measure corrected by double permutation approch (node label permutation can the be perfomed on this output)

### References

Farine, D. R., & Carter, G. G. (2022). Permutation tests for hypothesis testing with animal social network data: Problems and potential solutions. Methods in Ecology and Evolution, 13, 144- 156. https://doi.org/10.1111/2041-210X.13741

[Package ANTs version 0.0.16 Index]