microorganisms.groups {AMR}R Documentation

Data Set with 521 Microorganisms In Species Groups

Description

A data set containing species groups and microbiological complexes, which are used in the clinical breakpoints table.

Usage

microorganisms.groups

Format

A tibble with 521 observations and 4 variables:

Details

Like all data sets in this package, this data set is publicly available for download in the following formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, SAS, and Stata. Please visit our website for the download links. The actual files are of course available on our GitHub repository.

See Also

as.mo() microorganisms

Examples

microorganisms.groups

# these are all species in the Bacteroides fragilis group, as per WHONET:
microorganisms.groups[microorganisms.groups$mo_group == "B_BCTRD_FRGL-C", ]

[Package AMR version 2.1.1 Index]