example_isolates_unclean {AMR}

Data Set with Unclean Data

Description

A data set containing 3 000 microbial isolates that are not cleaned up and consequently not ready for AMR data analysis. This data set can be used for practice.

Usage

example_isolates_unclean

Format

A tibble with 3 000 observations and 8 variables:

• patient_id
  ID of the patient

• date
  date of receipt at the laboratory

• hospital
  ID of the hospital, from A to C

• bacteria
  info about microorganism that can be transformed with as.mo(), see also microorganisms

• AMX:GEN
  4 different antibiotics that have to be transformed with as.sir()

Details

Like all data sets in this package, this data set is publicly available for download in the following formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, SAS, and Stata. Please visit our website for the download links. The actual files are of course available on our GitHub repository.

Examples

example_isolates_unclean