example_isolates {AMR} | R Documentation |
Data Set with 2 000 Example Isolates
Description
A data set containing 2 000 microbial isolates with their full antibiograms. This data set contains randomised fictitious data, but reflects reality and can be used to practise AMR data analysis. For examples, please read the tutorial on our website.
Usage
example_isolates
Format
A tibble with 2 000 observations and 46 variables:
-
date
Date of receipt at the laboratory -
patient
ID of the patient -
age
Age of the patient -
gender
Gender of the patient, either "F" or "M" -
ward
Ward type where the patient was admitted, either "Clinical", "ICU", or "Outpatient" -
mo
ID of microorganism created withas.mo()
, see also the microorganisms data set -
PEN:RIF
40 different antibiotics with classsir
(seeas.sir()
); these column names occur in the antibiotics data set and can be translated withset_ab_names()
orab_name()
Details
Like all data sets in this package, this data set is publicly available for download in the following formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, SAS, and Stata. Please visit our website for the download links. The actual files are of course available on our GitHub repository.
Examples
example_isolates