AICc {AICcmodavg} | R Documentation |

## Computing AIC, AICc, QAIC, and QAICc

### Description

Functions to compute Akaike's information criterion (AIC), the second-order AIC (AICc), as well as their quasi-likelihood counterparts (QAIC, QAICc).

### Usage

```
AICc(mod, return.K = FALSE, second.ord = TRUE, nobs = NULL, ...)
## S3 method for class 'aov'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'betareg'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'clm'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'clmm'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'coxme'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'coxph'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'fitdist'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'fitdistr'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'glm'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, c.hat = 1, ...)
## S3 method for class 'glmmTMB'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, c.hat = 1, ...)
## S3 method for class 'gls'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'gnls'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'hurdle'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'lavaan'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'lm'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'lme'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'lmekin'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'maxlikeFit'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, c.hat = 1, ...)
## S3 method for class 'mer'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'merMod'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'lmerModLmerTest'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'multinom'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, c.hat = 1, ...)
## S3 method for class 'negbin'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'nlme'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'nls'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'polr'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'rlm'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'survreg'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
## S3 method for class 'unmarkedFit'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, c.hat = 1, ...)
## S3 method for class 'vglm'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, c.hat = 1, ...)
## S3 method for class 'zeroinfl'
AICc(mod, return.K = FALSE, second.ord = TRUE,
nobs = NULL, ...)
```

### Arguments

`mod` |
an object of class |

`return.K` |
logical. If |

`second.ord` |
logical. If |

`nobs` |
this argument allows to specify a numeric value other than total
sample size to compute the AICc (i.e., |

`c.hat` |
value of overdispersion parameter (i.e., variance inflation factor) such
as that obtained from |

`...` |
additional arguments passed to the function. |

### Details

`AICc`

computes one of the following four information criteria:

Akaike's information criterion (AIC, Akaike 1973),

```
-2 *
log-likelihood + 2 * K,
```

where the log-likelihood is the maximum
log-likelihood of the model and *K* corresponds to the number of
estimated parameters.

Second-order or small sample AIC (AICc, Sugiura 1978, Hurvich and Tsai 1989, 1991),

`-2 * log-likelihood + 2 * K * (n/(n - K - 1)),`

where *n* is the sample size of the data set.

Quasi-likelihood AIC (QAIC, Burnham and Anderson 2002),

```
QAIC =
\frac{-2 * log-likelihood}{c-hat} + 2 * K,
```

where *c-hat* is the
overdispersion parameter specified by the user with the argument
`c.hat`

.

Quasi-likelihood AICc (QAICc, Burnham and Anderson 2002),

```
QAIC =
\frac{-2 * log-likelihood}{c-hat} + 2 * K * (n/(n - K - 1))
```

.

Note that AIC and AICc values are meaningful to select among
`gls`

or `lme`

models fit by maximum likelihood. AIC and
AICc based on REML are valid to select among different models that
only differ in their random effects (Pinheiro and Bates 2000).

### Value

`AICc`

returns the AIC, AICc, QAIC, or QAICc, or the number of
estimated parameters, depending on the values of the arguments.

### Note

The actual (Q)AIC(c) values are not really interesting in themselves, as they depend directly on the data, parameters estimated, and likelihood function. Furthermore, a single value does not tell much about model fit. Information criteria become relevant when compared to one another for a given data set and set of candidate models.

### Author(s)

Marc J. Mazerolle

### References

Akaike, H. (1973) Information theory as an extension of the maximum
likelihood principle. In: *Second International Symposium on
Information Theory*, pp. 267–281. Petrov, B.N., Csaki, F., Eds,
Akademiai Kiado, Budapest.

Anderson, D. R. (2008) *Model-based Inference in the Life
Sciences: a primer on evidence*. Springer: New York.

Burnham, K. P., Anderson, D. R. (2002) *Model Selection and
Multimodel Inference: a practical information-theoretic
approach*. Second edition. Springer: New York.

Burnham, K. P., Anderson, D. R. (2004) Multimodel inference:
understanding AIC and BIC in model selection. *Sociological
Methods and Research* **33**, 261–304.

Dail, D., Madsen, L. (2011) Models for estimating abundance from
repeated counts of an open population. *Biometrics* **67**,
577–587.

Hurvich, C. M., Tsai, C.-L. (1989) Regression and time series model
selection in small samples. *Biometrika* **76**, 297–307.

Hurvich, C. M., Tsai, C.-L. (1991) Bias of the corrected AIC
criterion for underfitted regression and time series
models. *Biometrika* **78**, 499–509.

MacKenzie, D. I., Nichols, J. D., Lachman, G. B., Droege, S., Royle,
J. A., Langtimm, C. A. (2002) Estimating site occupancy rates when
detection probabilities are less than one. *Ecology* **83**,
2248–2255.

MacKenzie, D. I., Nichols, J. D., Hines, J. E., Knutson, M. G.,
Franklin, A. B. (2003) Estimating site occupancy, colonization, and
local extinction when a species is detected imperfectly. *Ecology*
**84**, 2200–2207.

Pinheiro, J. C., Bates, D. M. (2000) *Mixed-effect models in S and
S-PLUS*. Springer Verlag: New York.

Royle, J. A. (2004) *N*-mixture models for estimating population
size from spatially replicated counts. *Biometrics* **60**,
108–115.

Sugiura, N. (1978) Further analysis of the data by Akaike's
information criterion and the finite corrections. *Communications
in Statistics: Theory and Methods* **A7**, 13–26.

### See Also

`AICcCustom`

, `aictab`

, `confset`

,
`importance`

, `evidence`

, `c_hat`

,
`modavg`

, `modavgShrink`

,
`modavgPred`

, `useBIC`

,

### Examples

```
##cement data from Burnham and Anderson (2002, p. 101)
data(cement)
##run multiple regression - the global model in Table 3.2
glob.mod <- lm(y ~ x1 + x2 + x3 + x4, data = cement)
##compute AICc with full likelihood
AICc(glob.mod, return.K = FALSE)
##compute AIC with full likelihood
AICc(glob.mod, return.K = FALSE, second.ord = FALSE)
##note that Burnham and Anderson (2002) did not use full likelihood
##in Table 3.2 and that the MLE estimate of the variance was
##rounded to 2 digits after decimal point
##compute AICc for mixed model on Orthodont data set in Pinheiro and
##Bates (2000)
## Not run:
require(nlme)
m1 <- lme(distance ~ age, random = ~1 | Subject, data = Orthodont,
method= "ML")
AICc(m1, return.K = FALSE)
## End(Not run)
```

*AICcmodavg*version 2.3-3 Index]