generateCheckReport {AFM}

Generate a check report for one AFMImage

Description

Generate a check report in pdf format in order to analyse the distribution and the isotropy of heights of the AFMImage.

Usage

generateCheckReport(AFMImage)

Arguments

AFMImage

an AFMImage imported from Nanoscope Analysis(TM) with importFromNanoscope or created manually AFMImage

Author(s)

M.Beauvais

Examples

## Not run: 
library(AFM)

# Analyse the AFMImageOfRegularPeaks AFMImage sample from this package
  data("AFMImageOfRegularPeaks")
  AFMImage<-AFMImageOfRegularPeaks
# exportDirectory="C:/Users/my_windows_login" or exportDirectory="/home/ubuntu"
  exportDirectory=tempdir()
  AFMImage@fullfilename<-paste(exportDirectory,"AFMImageOfRegularPeaks.txt",sep="/")
  
# Start to check if your sample is normaly distributed and isotropic.
  generateCheckReport(AFMImage)
# If the sample is normaly distributed and isotropic, generate a full report
  generateReport(AFMImage)

# Analyse your own AFM image from nanoscope analysis (TM) software tool
   anotherAFMImage<-importFromNanoscope("c:/users/me/myimage.txt")
# Start to check if your sample is normaly distributed and isotropic.
   generateCheckReport(anotherAFMImage)
# If your sample is normaly distributed and isotropic, generate a full report
   generateReport(anotherAFMImage)

## End(Not run)