MGSM27 {ADAPTS}R Documentation

Myeloma Genome Signature Matrix 27

Description

Newman et al's 2015 plus 5 myeloma specific cell types. Osteoclasts, Adipocytes, Osteoblasts, Multiple Myeloma Plasma Cells, and Plasma Memory Cells

Usage

data("MGSM27")

Format

A data frame with 601 observations on the following 27 variables.

B.cells.naive

a numeric vector

B.cells.memory

a numeric vector

Plasma.cells

a numeric vector

T.cells.CD8

a numeric vector

T.cells.CD4.naive

a numeric vector

T.cells.CD4.memory.resting

a numeric vector

T.cells.CD4.memory.activated

a numeric vector

T.cells.follicular.helper

a numeric vector

T.cells.regulatory..Tregs.

a numeric vector

T.cells.gamma.delta

a numeric vector

NK.cells.resting

a numeric vector

NK.cells.activated

a numeric vector

Monocytes

a numeric vector

Macrophages.M0

a numeric vector

Macrophages.M1

a numeric vector

Macrophages.M2

a numeric vector

Dendritic.cells.resting

a numeric vector

Dendritic.cells.activated

a numeric vector

Mast.cells.resting

a numeric vector

Mast.cells.activated

a numeric vector

Eosinophils

a numeric vector

Neutrophils

a numeric vector

MM.plasma.cell

a numeric vector

osteoblast

a numeric vector

osteoclast

a numeric vector

PlasmaMemory

a numeric vector

adipocyte

a numeric vector

Details

MGSM27 as constructed for Identifying a High-risk Cellular Signature in the Multiple Myeloma Bone Marrow Microenvironment.

Source

https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-3732/ https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-3711/ https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-4152/

Examples

data(MGSM27)
heatmap(as.matrix(MGSM27))

[Package ADAPTS version 1.0.6 Index]