Gene Enrichment Analysis from ACSN Maps or GMT Files


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Documentation for package ‘ACSNMineR’ version 0.16.8.25

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ACSN_maps Atlas of Cancer Signalling Networks
cnum Convert to numeric
Create_master_map From a list of maps, create or replace a master
enrichment Gene set enrichment analysis
enrichment_test Result from enrichment test of "genes_test" on the ACSN maps
format_from_gmt Import data from gmt files Convert gmt file to dataframe that can be used for anaysis
genes_test Set of genes to test map
multisample_enrichment Automated gene set analysis for multiple sets
p.val.calc Calculate p-value
represent_enrichment Graphic representation of enrichment
reverselog_trans Scale for barplots and heatmaps