ABC_P2_gamma {ABCp2} | R Documentation |
This function fits offspring data to a special case of the gamma distribution, in which zero values of offspring are excluded and all values are rounded to a whole number, and estimates P2 based on that distribution and the specificed priors.
ABC_P2_gamma(n, ObsMean, S_Lo, S_Hi, R_Lo, R_Hi, delta, iter)
n |
number of observations. |
ObsMean |
the observed mean number of offspring sired by the second male. |
S_Lo |
minimum shape value for the distribution. |
S_Hi |
maximum shape value for the distribution. |
R_Lo |
minimum rate value for the distribution. |
R_Hi |
maximum rate value for the distribution. |
delta |
maximum allowed difference between the estimated mean and observed mean number of offspring produced by the second male. |
iter |
number of iterations used to build the posterior. |
posterior |
Posterior distribution of P2 values. |
Shape |
Vector of values for the shape parameter. |
Rate |
Vector of values for the rate parameter. |
M. Catherine Duryea, Andrew D. Kern, Robert M. Cox, and Ryan Calsbeek
#Fit the Shape and Rate hyperpriors to a distribution of offspring.
data(fungus)
fit_dist_gamma(fungus$Total_Offspring)
#Use hyperiors and priors calculated from the data to estimate P2.
#Plot the saved distributions for the Shape and Rate parameters.
#Adjust, if necessary.
fungus_P2<-ABC_P2_gamma(12, 9.9, 1.14, 2.52, 0.06, 0.18, 0.1, 100)
hist(fungus_P2$posterior)
hist(fungus_P2$Shape)
hist(fungus_P2$Rate)