vartrack_prob_detect_xsect {phylosamp}

Calculate probability of detecting a variant assuming cross-sectional sampling

Description

This function calculates the probability of detecting the presence of a variant given a sample size and assuming a single, cross-sectional sample of detected infections.

Usage

vartrack_prob_detect_xsect(p_v1, n, omega, c_ratio = 1)

Arguments

p_v1

variant prevalence (proportion)

n

sample size

omega

probability of sequencing (or other characterization) success

c_ratio

coefficient of detection ratio, calculated as the ratio of the coefficients of variant 1 to variant 2. Default = 1 (no bias)

Value

scalar of expected sample size

Author(s)

Shirlee Wohl, Elizabeth C. Lee, Bethany L. DiPrete, and Justin Lessler

See Also

Other variant detection functions: vartrack_prob_detect_cont(), vartrack_prob_detect(), vartrack_samplesize_detect_cont(), vartrack_samplesize_detect_xsect(), vartrack_samplesize_detect()

Other variant tracking functions: vartrack_cod_ratio(), vartrack_prob_detect_cont(), vartrack_prob_detect(), vartrack_prob_prev_xsect(), vartrack_prob_prev(), vartrack_samplesize_detect_cont(), vartrack_samplesize_detect_xsect(), vartrack_samplesize_detect(), vartrack_samplesize_prev_xsect(), vartrack_samplesize_prev()

Examples

vartrack_prob_detect_xsect(p_v1 = 0.02, n = 100, omega = 0.8, c_ratio = 1)