biophysics {medfate}R Documentation

Physical and biophysical utility functions

Description

Internal utility functions for the calculation of biophysical variables.

Usage

biophysics_radiationDiurnalPattern(t, daylength)

biophysics_temperatureDiurnalPattern(
  t,
  tmin,
  tmax,
  tminPrev,
  tmaxPrev,
  tminNext,
  daylength
)

biophysics_leafTemperature(absRad, airTemperature, u, E, leafWidth = 1)

biophysics_leafTemperature2(
  SWRabs,
  LWRnet,
  airTemperature,
  u,
  E,
  leafWidth = 1
)

biophysics_leafVapourPressure(leafTemp, leafPsi)

biophysics_irradianceToPhotonFlux(I, lambda = 546.6507)

biophysics_waterDynamicViscosity(temp)

Arguments

t

Time of the day (in seconds).

daylength

Day length (in seconds).

tmin, tmax

Minimum and maximum daily temperature (ºC).

tminPrev, tmaxPrev, tminNext

Maximum and minimum daily temperatures of the previous and following day (ºC).

absRad

Absorbed long- and short-wave radiation (in W·m-2).

airTemperature

Air temperature (in ºC).

u

Wind speed above the leaf boundary layer (in m/s).

E

Transpiration flow (in mmol H20·m-2·s-1) per one sided leaf area basis.

leafWidth

Leaf width (in cm).

SWRabs

Absorbed short-wave radiation (in W·m-2).

LWRnet

Net long-wave radiation balance (in W·m-2).

leafTemp

Leaf temperature (ºC).

leafPsi

Leaf water potential (MPa).

I

Irradiance (in W*m-2).

lambda

Wavelength (in nm).

temp

Temperature (ºC).

Details

Functions biophysics_leafTemperature and biophysics_leafTemperature2 calculate leaf temperature according to energy balance equation given in Campbell and Norman (1988).

Function biophysics_radiationDiurnalPattern follows the equations given in Liu and Jordan (1960).

Function biophysics_temperatureDiurnalPattern determines diurnal temperature pattern assuming a sinusoidal pattern with T = Tmin at sunrise and T = (Tmin+Tmax)/2 at sunset and a linear change in temperature between sunset and Tmin of the day after (McMurtrie et al. 1990).

Function biophysics_waterDynamicViscosity calculates water dynamic viscosity following the Vogel (1921) equation.

Value

Values returned for each function are:

Author(s)

Miquel De Cáceres Ainsa, CREAF

References

Campbell, G. S., and J. M. Norman. 1998. An introduction to environmental biophysics: 2nd edition. (eqns. 14.1 & 14.3)

B. Y. H. Liu and R. C. Jordan, “The interrelationship and characteristic distribution of direct, diffuse and total solar radiation,” Solar Energy, vol. 4, no. 3, pp. 1–19, 1960.

McMurtrie, R. E., D. A. Rook, and F. M. Kelliher. 1990. Modelling the yield of Pinus radiata on a site limited by water and nitrogen. Forest Ecology and Management 30:381–413.

H. Vogel, "Das Temperaturabhangigkeitsgesetz der Viskositat von Flussigkeiten", Physikalische Zeitschrift, vol. 22, pp. 645–646, 1921.

See Also

spwb


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