Analysis of fMRI Experiments

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Documentation for package ‘fmri’ version 1.9.12

• DESCRIPTION file.
• Code demos. Use demo() to run them.

Help Pages

condensefMRI	Extract data or residuals from a fmridata object
cutroi	I/O function
expandfMRI	Extract data or residuals from a fmridata object
extractData	Extract data or residuals from a fmridata object
fmri.cluster	Cluster thresholding.
fmri.design	Linear Model for FMRI Data
fmri.designG	Design matrix for fMRI group analysis
fmri.detrend	Detrend fMRI time series
fmri.lm	Linear Model for fMRI data
fmri.lmePar	Linear Mixed-effects Model for fMRI data
fmri.metaPar	Linear Mixed-effects Meta-Analysis model for fMRI data
fmri.pvalue	P-values
fmri.searchlight	Searchlight signal detection
fmri.sgroupICA	Spatial group ICA for fmri
fmri.sICA	Spacial ICA for fmri data
fmri.smooth	Smoothing Statistical Parametric Maps
fmri.stimulus	Linear Model for FMRI Data
fmri2oro	Convert Between fmridata and oro.nifti Objects
gen_fmridata	Generate fmridata example
getSearchlightPattern	Extract searchlight pattern from a SPM
hvred	Translation between smoothness and bandwidth for Gaussian kernel
ICAfingerprint	IC fingerprinting
niftiImage2fmri	Create fmridata object from niftiImage
oro2fmri	Convert Between fmridata and oro.nifti Objects
plot.fmridata	I/O functions
plot.fmrigroupICA	Diagnostics plots for objects of class "'fmriICA"'
plot.fmriICA	Diagnostics plots for objects of class "'fmriICA"'
plot.fmripvalue	Visualize fMRI p-value maps
plot.fmrisegment	I/O functions
print.fmridata	I/O functions
read.AFNI	I/O function
read.ANALYZE	I/O Functions
read.DICOM	I/O function
read.NIFTI	I/O Functions
setmask	Add or replace mask in an fmridata object
sincfilter	A function for sinc-interpolation
slicetiming	slicetiming for fmridata-objects
summary.fmridata	I/O functions
write.AFNI	I/O functions
write.ANALYZE	I/O Functions
write.NIFTI	I/O Functions